Occurrence

Centre for Biodiversity Genomics (BIOUG) - Marine Invertebrates

Dernière version Publié par University of Guelph le 21 avril 2017 University of Guelph
Date de publication:
21 avril 2017
Publié par:
University of Guelph
Licence:
CC0 1.0

Téléchargez la dernière version de la ressource en tant qu'Archive Darwin Core (DwC-A), ou les métadonnées de la ressource au format EML ou RTF :

Données sous forme de fichier DwC-A (zip) télécharger 3 464 enregistrements dans Anglais (189 KB) - Fréquence de mise à jour: quand cela est nécessaire
Métadonnées sous forme de fichier EML télécharger dans Anglais (15 KB)
Métadonnées sous forme de fichier RTF télécharger dans Anglais (13 KB)

Description

The Centre for Biodiversity Genomics (BIOUG) will be releasing data on marine invertebrates to the public domain as the data is published in peer-reviewed journals. Every specimen in the resource is digitized, and the exact storage location of each specimen is tracked in a collection management information system for quick reference and retrieval. The databased information for every voucher is also archived in the Barcode of Life Data System (BOLD), permitting the permanent storage, validation and analysis of barcode sequence data and associated specimen metadata. As of April 2017, this resource contains specimen information from the following resources: 1. Carr, C. M., Hardy, S. M., Brown, T. M., Macdonald, T. A., & Hebert, P. D. N. (2011). A tri-oceanic perspective: DNA barcoding reveals geographic structure and cryptic diversity in Canadian polychaetes. PLoS One, 6(7), e22232. 2. Layton, K. K., Martel, A. L., & Hebert, P. D. N. (2014). Patterns of DNA barcode variation in Canadian marine molluscs. PLoS One, 9(4), e95003.

Enregistrements de données

Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 3 464 enregistrements.

Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.

Versions

Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.

Comment citer

Les chercheurs doivent citer cette ressource comme suit:

Telfer A, deWaard J (2017): Centre for Biodiversity Genomics (BIOUG) - Marine Invertebrates. v1.1. University of Guelph. Dataset/Occurrence. http://data.canadensys.net/ipt/resource?r=cbg_marine&v=1.1

Droits

Les chercheurs doivent respecter la déclaration de droits suivante:

L’éditeur et détenteur des droits de cette ressource est University of Guelph. En vertu de la loi, l'éditeur a abandonné ses droits par rapport à ces données et les a dédié au Domaine Public (CC0 1.0). Les utilisateurs peuvent copier, modifier, distribuer et utiliser ces travaux, incluant des utilisations commerciales, sans aucune restriction.

Enregistrement GBIF

Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 5ca5f0b6-d221-4f69-b7ac-8579180942b5.  University of Guelph publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du Canada Biodiversity Information Facility.

Mots-clé

Occurrence; Specimen

Contacts

Angela Telfer
  • Fournisseur Des Métadonnées
  • Créateur
Data Management Lead - Collections
Centre for Biodiversity Genomics, University of Guelph
50 Stone Road East
N1G 2W1 Guelph
Ontario
CA
519-824-4120 ext.58125
Jeremy deWaard
  • Propriétaire
  • Fournisseur Des Métadonnées
  • Créateur
  • Personne De Contact
Associate Director – Collections
Centre for Biodiversity Genomics, University of Guelph
50 Stone Road East
N1G 2W1 Guelph
Ontario
CA
519-824-4120 ext. 52258

Couverture géographique

The majority of the records included in this resource were collected in Canada, with the remainder collected in Florida (United States of America) and Greenland. Detailed collection information for each resource include the field id, location and latitude and longitude are included for each record.

Enveloppe géographique Sud Ouest [25,93, -169,26], Nord Est [83,93, -6,52]

Couverture taxonomique

All specimens were identified to the lowest level of taxonomy possible, using a combination of morphological identification and taxonomic assignment based on DNA barcode sequence similarity.

Phylum Annelida, Cnidaria, Mollusca

Couverture temporelle

Date de début / Date de fin 1999-07-27 / 2011-10-17

Méthodes d'échantillonnage

Carr, C. M., Hardy, S. M., Brown, T. M., Macdonald, T. A., & Hebert, P. D. N. (2011). A tri-oceanic perspective: DNA barcoding reveals geographic structure and cryptic diversity in Canadian polychaetes. PLoS One, 6(7), e22232. "A total of 2324 polychaetes were collected (detailed specimen information is available in the “Polychaetes of North America (PONA)” project on BOLD; www.barcodinglife.org [35]) between 1999 and 2009 from eight locations in Canada and Alaska. These sites included Bamfield (British Columbia; n = 553), Bering Sea (Alaska; n = 137), Chukchi Sea (Alaska; n = 26), Churchill (Manitoba; n = 864), Resolute (Nunavut; n = 167), Igloolik (Nunavut; n = 91), Torngat Mountains National Park (Newfoundland and Labrador; n = 77), and St. Andrews (New Brunswick; n = 409). Samples from most sites were collected in the intertidal zone or from nearshore coastal habitats using subtidal dredges, diving, and plankton tows. Bering and Chukchi Sea samples were obtained from ship-based sampling in offshore waters (40–60 m water depth) using a van Veen grab and a plumb-staff beam trawl with 4 mm mesh. Samples were sieved on 1 and 0.5 mm mesh. Whenever possible, multiple specimens of each morphospecies were collected. Specimens were fixed in either 70 or 90% ethanol, which was replaced at least three times to prevent dilution, and preserved in 95% ethanol." Layton, K. K., Martel, A. L., & Hebert, P. D. N. (2014). Patterns of DNA barcode variation in Canadian marine molluscs. PLoS One, 9(4), e95003. "A total of 2352 specimens were collected from 1999 to 2012 at sites across Canada (Figure 1). One quarter (666) of these specimens were collected from Alaska, Greenland and Iceland, although species found in these locations also exist in Canadian waters. ... When possible, five specimens per species were collected from intertidal or subtidal habitats using plankton nets, small dredges, and SCUBA diving, but samples from the Beaufort Sea were collected from deep subtidal soft-bottom habitats using an Agassiz trawl. Specimens were immediately fixed in 90–100% ethanol, with subsequent replacement of ethanol to prevent its dilution. During fixation, the opercula of gastropods were removed, and the shells of bivalves were separated to ensure preservation of internal tissues. After each collecting trip, specimens were placed in fresh 95% ethanol and stored at −20°C."

Etendue de l'étude Please review the referenced papers for study extent.
Contrôle qualité All specimens are visible on BOLD (www.boldsystems.org). Through comparison with other specimens using their DNA barcode sequences, contaminated specimens and misidentifications were discovered and fixed where possible. Fields underwent a data cleansing process to ensure data were entered in a standardized matter.

Description des étapes de la méthode:

  1. Please review the referenced papers for step description.

Données de collection

Nom de la collection Centre for Biodiversity Genomics
Identifiant de collection BIOUG
Méthode de conservation des spécimens Alcohol

Métadonnées additionnelles

All data included in this release are publicly available on the Barcode of Life Data Systems (BOLD; www.boldsystems.org). Each specimen is also linked to a COI DNA barcode deposited in GenBank at the National Center for Biotechnology Information (NCBI; http://www.ncbi.nlm.nih.gov/genbank/).

Objet To present in one resource the published marine invertebrate data archived at the Centre for Biodiversity Genomics (BIOUG) of the University of Guelph.
Description de la fréquence de mise à jour The resource will be updated as needed, when significant changes to the original resource have developed or additional publications have come to the attention of the resource creator.
Identifiants alternatifs http://data.canadensys.net/ipt/resource?r=cbg_marine